PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004517027.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family C3H
Protein Properties Length: 520aa    MW: 56938 Da    PI: 7.4267
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004517027.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.33.9e-11149173226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     +++ C++++ t tCk+G++CkF H+
  XP_004517027.1 149 GEKDCSHYMLTRTCKFGESCKFDHP 173
                     7889********************8 PP

2zf-CCCH361.2e-11200225126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     ++++ C++f++t  Ck+G+rCkF+H+
  XP_004517027.1 200 PGEPDCPYFLKTKKCKFGSRCKFNHP 225
                     5789*********************8 PP

3zf-CCCH35.61.5e-11244267427
                     ---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                      +C f+++tG CkyG+ CkF+H++
  XP_004517027.1 244 TPCAFYLKTGLCKYGAACKFHHPK 267
                     58********************96 PP

4zf-CCCH38.32.3e-12320343326
                     S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                     ++ C+f+++tG Ck+G++C+++H+
  XP_004517027.1 320 EVDCPFYMKTGSCKFGATCRYNHP 343
                     689********************8 PP

5zf-CCCH41.22.7e-13406429326
                     S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                     + +C+++++tG+CkyG+rCk++H+
  XP_004517027.1 406 QIECDYYMKTGICKYGERCKYHHP 429
                     568********************9 PP

6zf-CCCH41.32.6e-13457482227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     + e+C+++++tGtCk+G +CkF H+p
  XP_004517027.1 457 GVEICPYYLKTGTCKFGVTCKFDHPP 482
                     689*********************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0012147174IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.497147175IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.15E-5148174IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-8149173IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-4199226IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.065199227IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-9201225IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.23E-5204225IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.8E-4205224IPR000571Zinc finger, CCCH-type
SMARTSM003563.7E-6240267IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.239240268IPR000571Zinc finger, CCCH-type
PfamPF006424.1E-9244267IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.76E-6244268IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-5245266IPR000571Zinc finger, CCCH-type
SMARTSM003563.0E-6317344IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.817317345IPR000571Zinc finger, CCCH-type
PfamPF006426.0E-10320343IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-5321344IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.1E-4323342IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-7403430IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.047403431IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.02E-7407432IPR000571Zinc finger, CCCH-type
PfamPF006429.7E-11407429IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-5409429IPR000571Zinc finger, CCCH-type
SMARTSM003564.1E-6455482IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.873455483IPR000571Zinc finger, CCCH-type
PfamPF006428.6E-11457482IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.15E-5458482IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.4E-6459480IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    Send to blast
MENRIYSSYS PTNYRVGGAT STSPTRYYDP DSMFLSHYRR TAEAAAAASA HRYSSISDID  60
IAPPGVASRI SSSSTANYLS QTSPWSSAFP AANAGSLSLD LNRSTDALYH PTILSTIGQN  120
EAWYTTNSLT KRPRYETGST LPIYPQRPGE KDCSHYMLTR TCKFGESCKF DHPIWVPEGG  180
IPDWKEVPNI VPSEILPERP GEPDCPYFLK TKKCKFGSRC KFNHPNVPSE NADVSGLPER  240
PLETPCAFYL KTGLCKYGAA CKFHHPKDIQ IQVSDELSHT VEQTQTNSVL DGATGDSQPI  300
NPLIPPLLHN SKGLPVRLGE VDCPFYMKTG SCKFGATCRY NHPAMNAINP TISTLAPSVL  360
ASSAANLNIG VINPAACLYQ AFDPRLSNPV SQVGTTQTVF PQRPGQIECD YYMKTGICKY  420
GERCKYHHPL DRATPSMSKL QSTVKLTPAG LPRREKGVEI CPYYLKTGTC KFGVTCKFDH  480
PPPGEVMEMA KSSQGTSTNN GGETDTNENV LGSDPEEDHA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818002e-57LN681800.1 Cucumis melo genomic scaffold, anchoredscaffold00017.
GenBankLN7132552e-57LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004517027.10.0PREDICTED: zinc finger CCCH domain-containing protein 37 isoform X1
SwissprotQ941Q31e-170C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLA0A072TR500.0A0A072TR50_MEDTR; Uncharacterized protein
STRINGGLYMA15G30265.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF75583345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-165floral homeotic protein (HUA1)